same problem.. cpanel works, but site is gone..
cpanel give a error in stats like:
can't create /home/madman/.cpanel/datastore/all_iplist.db: No such file or directory at /usr/local/cpanel/Cpanel/DIp/MainIP.pm line 250
Carp::croak('can\'t create /home/madman/.cpanel/datastore/all_iplist.db...